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21 Dec 2002Puerto Rico has a weed (very common in our lawn :-) that is very unusual: When you touch it, the leaves quickly retract/collapse. They say it is called Mimosa pudica. I was surprised to see a photo and description of this plant in a biology textbook: I feel like I'm living next door to a celebrity.
I'm curious to know what sort of international body is responsible for settling disputes about genus and species naming, precedence, and so on. It is a long-held rule that whoever first publishes a description of a species gets to name it. As part of the description, the author must distinguish the new species from its siblings. Read a good biology text (1993, Campbell). It answers some questions I always had about genetics:
20 Dec 2002Read an essay by Camille Paglia, an academic famous for her book Sexual Personae (1990?) which asserts that most great art is created by men, not women, as an outlet of unrequited sexual desire. Paglia claims that there will never be as many great women artists or writers because women don't have the same pent-up sexual desire (and need to impress the opposite sex?) as men. Naturally, her thesis is repugnant to feminists. The essay I read by Paglia is about date rape where she asserts that many of the victims bear some responsibility for the crime. Again, Paglia is going against the feminist dogma. She acknowledges that date rape is a crime, but says that if the victim behaves overly provocatively, she can bear some of the responsibility. This reminds me of the civil law principle of contributory negligence, where blame is apportioned between both parties, reflecting the truth that blame is not always black/white, but instead more gray. Her essay begins with an anecdote: She was talking to a man and he described a trip he took to Egypt, and the night he spent at the great pyramids. She was saddened, because she know that - as a woman - she would never be able to have such an experience. 15 Dec 2002Studying the gaussian ("normal") probability curve: it can be derived from the binomial distribution, since the gaussian curve can be thought of as the binomial distribution in its limit. There is no closed form solution for the area under the normal curve, so it has to be evaluated numerically, or with an approximation. The normal curve is e ** (-(x ** 2)) whereas the similar poisson curve is x * e ** (-x). The normal curve represents the distribution of a value which is a function of lots of independent factors (like height, weight, grades, etc). Whereas the Poisson represents the expected number of random events to occur in a given time interval (horiz axis represents the time interval). 13 Dec 2002Read The Persian Expedition (400 BC, Xenophon). Great book: the intro says that this book is (was) read by many upper class British children in their Greek classes. It is a detailed history of 10,000 Greek mercenaries fighting for Cyrus, against his brother, son of Darius. Cyrus is killed and "the 10,000" are left stranded in Persia, and undertake a difficult and dangerous return journey. When they finally spy the Black Sea, they cry "The Sea, The Sea!". This book points out that the meaning of the biblical commandment "Thou shalt not take the lords name in vain" has nothing to do with cursing, but instead means that if you swear a promise, invoking a god, you must keep your promise. Thus the meaning of "taking an oath". I suppose this was early contract law :-) 6 Dec 2002Read At The Waters Edge (C. Zimmer) a book on evolution that focuses on the transition of life from the oceans to land (tetrapods), and back again to the water (whales, dolphins, seals). The book has an excellent discussion of cladistics (the study of building a tree of life) and summarizes the three common approaches to building a tree of life
The goal of cladistics is to build a tree that represents the ancestor/descendent relationships of all species that ever lived on earth. One of the consequences of this is that ancestors can be described even if no fossil remains exist. A "clade" is a fork in the tree, and all its descendents. For instance, given two species A and B (living or extinct), we can define clade C as "the most recent common ancestor of A and B". C is a fork in the tree's branches, and A is in one fork, and B is in the other fork. Another way of identifying an ancestor clade (besides "the most recent common ancestor of A and B") is "The oldest ancestor of A that does not include B in its descendents". For a given fork in the tree, there is both the ancestor species at the fork, as well as the set of all species that descended from that fork (the clade). But the species and clade cannot be used interchangeably, because that species may have persisted for a long time, and generated many descendents (and so a distinct clade exists for each descendent-fork). In the above methods for defining an ancestor clade, A and B can be a species or a clade. For those persons that don't believe in evolution, a tree can still be built with cladistics, but its the interpretation of the branches is not "ancestor" but instead the vaguer "common traits". Ideally, for each clade, we should be able to describe how the species belonging to the clade differ from other species not in the clade, that is, what specific anatomical traits distinguish this clade? But, strictly speaking, it is not necessary to have these anatomical descriptions to define clades. Cladistics has rendered some classical animal groupings obsolete. For example, birds are now thought to be descended from dinosaurs, so birds are a member of the reptile family - which is contrary to the classical view which treats birds and reptiles separately. Cladistics was invented by Henning (Germany) around 1950 and has finally brought objectivity to taxonomy. It is rendering the notion of "family" "class" "order" obsolete, although the lower-level "species" and "genus" are still meaningful. Establishing uniform and concrete names for species, living and extinct, is important, yet difficult. The notion of "species type" (the original specimen that was described to define a new species) is critical. For ancestor clades, the rule has been established that once a scientist gives a name to an ancestor clade (using one of the two methods defined above) that name is permanently established. Furthermore, if two clade-names are established, and the two clades turn out to be identical, the clade-name that was established first is adopted. (E.g. if clade X is most recent common ancestor of A and B; and clade Y is most recent common ancestor of C and D, then later it turns out that X = Y, then whichever of X or Y was published first wins, even if the first name is not as appropriate). An example of a clade name might be "The dinosaur clade is defined as the most recent common ancestor of a bluebird and a triceratops". 4 Dec 2002Saw The Fantasticks on TV last night. This musical had a 40-year run off-Broadway, and includes the wonderful song Try to Remember that Kind of September. The movie was made in 1995, but not released until 2000 (there must be an interesting story behind that). Female lead Jean Kelly is great, but not very well-known. Critics who have seen both the play and the movie seem to dislike the movie: First, two songs were cut; and second, the play was usually performed in small, intimate settings with no scenery, so the players closely related to the audience. The movie, to those audience members, seems very distant and aloof. 30 Nov 2002Saw a live telecast of the British Commons. Very refreshing and lively. One MP made a speech about the mideast that would never be heard in the USA: He complained about the double-standard the US has regarding the mideast: We are going to war with Iraq because (1) they have weapons of mass destruction; and (2) Iraq is not complying with UN resolutions. But Israel is also guilty of both those, and yet the US rewards and protects Israel. Would any US congressperson ever make such a speech? 3 Nov 2002Read Churchill - A Biography (Roy Jenkins). A balanced biography that covers the warts as well as the legend. On the whole, I wasn't too impressed with Churchill's character:
To be fair, he loved Britain, and fought hard for some worker's rights (such as unemployment insurance) but he suffers in comparison to John Adams, who was humble, modest, and a good family man. 29 Oct 2002Read John Adams (D. McCollough). Lots of neat quotes: An Empire of laws, not men - James Harrington
No taxation without representation - Slogan in 1750's Ireland (did not originate in USA)
We must hang together or separately - Carter Braxton (?? is this a play on words)
I never could believe that Providence had sent a few men into the world, ready booted and spurred to ride, and millions ready saddled and bridled to be ridden - Richard Rumbold (1685; British conspirator; spoken last words before executed). The book talks about a huge debate that the founding fathers had, which seems rather remote now: Some wanted a very strong president (almost a monarch) and a weak or non-existent senate. Others wanted a strong senate (and strong state's rights) and a weaker president (no monarchial titles). 21 Oct 2002Big bankruptcy this month: Enron, a Texas-based energy company that made lots of money off of Californians during the deregulation fiasco. The Enron CEO and CFO stole millions from the shareholders, and lied regularly about the companies earnings. One of their tricks was to create wholly-owned subsidiaries, and to transfer their money-losing contracts into those subsidiaries. The values of these subsidiaries was artificially high and effectively hid the losses. Apparently, parent corporations are not required to report internal losses of wholly owned subsidiaries. Read a book review in Discover magazine, about The Blank Slate (2002, Steven Pinker). A book about the nature vs. nurture controversy (or as he calls it: human nature vs. the blank slate). The author claims that nature is more significant than nurture, but more importantly, he claims that proponents of nurture are motivated by political correctness (and wish to avoid appearance of racism). In one humorous passage, he says that even the most nurture-believing liberal will tell their teenage daughters to watch out for teenage boys, because the boy's genes will cause him to try to seduce girls. Specifically, he claims that research shows that genetics account for about 70% of a persons mental traits and personality. About 10% is upbringing; and the other 20% is chance or circumstance. This assertion, of course, gives lots of ammunition to racists and to proponents of eugenics. The author spends time trying to explain why the nurture-supporters pursue their belief. He says that their primary goal is to support equal opportunity and inhibit discrimination. The book is reminiscent of The Closing of the American Mind, because it attacks political correctness. But the liberals do have a point: every time a teacher or parent talks (accurately) about genetic pre-disposition of boys to guns and science fiction, and girls to homemaking, that may have the effect of discouraging girls to pursue careers in the sciences. One thing the book doesn't address is the opposite situation: Where liberals use the nature argument to absolve unsuccessful people of their failings (e.g. lazy people have chronic fatigue syndrome; obese people have eating disorders, etc) where as conservatives - who want victims to take personal responsibility - would emphasize the nurture side of the argument.
Another paradox: Liberals claim homosexuality is inherited, but violent behavior is learned (or you can view this conversely as conservatives claim homosexuality is learned, and violent behavior is inherited). As genetics makes advances, one can imagine a day in the future when genetic testing can reveal inherited characteristics of individuals (music, chess, math, leadership, communication, etc) that can be used to determine admission to schools or occupations. When kayaking last week in Puerto Rico's bioluminescent bay. The organisms are dinoflagellates, variety pyrodinium (pyro = fire). Similar to the 'red tide' algae blooms. But these PR glows are beautiful bright blue specks, which glow just for a second or two; and glow only when the water is agitated around them. Read Ship Fever (A. Barret): neat quote from Edward Young (1745; Night Thoughts) Nothing can satisfy but what confounds, Nothing but what astonishes is true. Night Thoughts looks like an interesting book (poem?) .. I must read it someday. 25 Sept 2002Read The Sinking of the Odradek Stadium. It contains a chinese proverb In men, love follows desire; in women, desire follows love And from Mulan: A single grain of rice can tip the scale. Just for kicks, I decided I would try to come up with a mathematical axiom system for two-dimensional geometry. Euclid did it, and there are many modern efforts, notably by Hilbert. I failed. It is a lot harder than it looks. One stumbling block for me is coming up with the undefined terms: any set of axioms relies on some undefined fundamental terms (point, line, on, contains, between, congruent) that are pre-supposed. And you have to decide if you are going to include metric notions like length, angles, or area. 21 Sept 2002Read The Greatest Generation (Tom Brokaw) and I must concur, because the timing of events was such that a person could really experience some great things in their life. If I could select a particular year to be born, and a sequence of events to participate in, it would be:
Of course, sketching out a life like this prompts me to ask: What should a youngster in today's world look for as a career? What fields are exploding and will have important consequences for future generations? My guesses are (1) Internet - data sharing to empower consumers and voters; (2) Cloning; (3) Genetic engineering; (4) Healthcare and longevity. I suppose the latter three are variations on the same theme. 15 Aug 2002Read Ten Things I Wish I Knew When I was Entering the Real World (Maria Shriver), and expansion of a college graduation address she gave. Here is my own list:
Relationships are so important, they need ten pieces of advice, all by themselves:
And while I'm at it, here are Dr. Laura's "10 stupid things women do to mess up their lives" (from her book of the same name). Good advice, but I don't like the fact that she frames everything negatively (but it probably boosted sales:-)
14 Aug 2002Read a review of a new book Sexual Selections (2003, Marlene Zuk). Its thesis is that scientific research about sexual behavior in the animal kingdom is distorted because of bias of the mostly male researchers. Examples include: reporting males as more aggressive than females; monogamous females vs. polygamous males; females tend to offspring while males don't. The author contends that there are a huge variety of counterexamples to be found in nature to counter all of these commonly accepted ideas. The author points out that people routinely use these scientific "truths" to help guide their own decision-making (e.g. in regards to choosing a mate, or homosexuality, or masturbation, or monogamy). We frequently ask ourselves what is "natural" in nature, and use that to guide us. Not only do we look to animals, we also look to primitive human cultures to give us a clue as to how we "should" behave if we were not corrupted by civilization (Eskimos leaving elderly to die in the snow; Samoans polygamy; topless Polynesian women, etc). 24 July 2002Talking about a problem robs the problem of its power. 14 July 2002Newspaper describes a "palladium" initiative by Microsoft to combat software piracy. Apparently the goal is to work with Intel to embed a unique ID in each computer, which would include the private part of a public key system. Thus all data sent from the computer can be signed; and encrypted data can only be read by that one computer. [This initiative is still alive, but requires special cryptographic hardware in the computer; and is not planned to be in the 2007 Vista operating system]. Federal law took effect this year that finally forced companies to account for stock options they issued to employees. Until now, successful companies could pay employees with stock options, and not report that expense on their books. This artificially boosted the companies earnings and profit (although it had no effect on companies that had declining stock prices). Companies are no required to report "diluted earnings per share" which accounts for all the stock options. And companies are required to treat the stock options as a concrete liability (I think they have to use a probabilistic prediction of the stock price at the time the option becomes exercisable). Another example of Puerto Rico welfare: Every family in PR gets free food for kids under 5. It is called the WIC program and exists all across the US, but other states only give it out to poor families. PR has no problem passing out our tax dollars to all their residents. 11 July 2002Misc political rants:
Read Robber Barons and Radicals (a historical collection of first-person accounts) hoping I could learn about robber barons like Carnegie (steel), Mellon (banking), Morgan (banking), Stanford (railroads), Rockefeller (oil), and Vanderbilt (railroads); but in fact the book is about the South immediately after the civil war. It is a very sad story: Immediately after the civil war, the federal government passed some great laws to provide equal protection to blacks (the 13th, 14th, and 15th amendments to the constitution); but the southerners refused to enforce them, and the federal government gave up after a couple of years. Most southern institutions blatantly discriminated against blacks, and any blacks that tried to enforce their rights were lynched or tortured. 8 July 2002Listening to Dr. Laura on the radio. Her style is a bit peremptory for me (she does not get all the facts before rendering an opinion), but she does have some good advice, such as Children would rather be praised than punished; but they would rather be punished than ignored.
Dating is not molding a piece of clay. Dating is hanging a picture on the wall to see if you can live with it the rest of your life.
I dont expect you to be _the_ best, but I expect you to be _your_ best [to a child] She is anti-choice, and very conservative. A bit of a hypocrite because she instructs women to stay home with their kids and sacrifice their careers; in the meantime: She only had one kid, and managed to get a PhD and have a full-time career as a psychologist. She claims she only worked part time when the kid was an infant (she says she worked at home when he was sleeping) but Im not buying it: I'll bet a maid and nanny were involved. Also, there is the strange story about her mother: Dr. Laura's mother was a recluse, and died alone: her body was discovered a month after death. Turns out Dr. Laura had not talked to her mother in years. 7 April 2002We are considering building a house on a lot. I've prepared a detailed specification, so that we dont have any misunderstandings with the contractor (like we had with the room addition in North Park). I've posted the specification on this web, so others can perhaps reuse it. 18 Feb 2002Still playing some chess online: Im now playing at pogo.com (used to play at zone.com). My rating is about 1750 here, where 1500 is the starting/average rating. The rating algorithm is neat: The amount your score goes up or down based on how different your ranking is from your opponent. Apparently an exponential curve of some sort, where the horizontal axis is the difference in ratings (before the match), and the vertical axis is the resultant change. After a match, both player's ratings change by the same amount, I think: one goes up, and one goes down. Not sure what happens with ties: There should still be a score change, but not as large as a victory by the lower-rated player. Just looked on some web site: the formula is: expectedOutcome = 1 / ( 1 + 10 ** ( K1 * playerDifference ) ); and changeInRating = K2 * ( actualOutcome - expectedOutcome ); This "outcome" terminology is to handle games other than chess, where a score of any sort (rather than just win/lose/tie) is possible. For chess, the outcomes are 0, 1/2, or 1 (that is, 1 point is available, split between the two players). 3 Jan 2002Read a golf book by Tiger woods. I've tried to distill it all into a handy guide: Slice Troubleshooting
Hook Troubleshooting
Troubleshooting: Topping the Ball
Troubleshooting: Hitting fat (behind the ball)
Troubleshooting: Push or Pull
Other Troubleshooting
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